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Category Archives: Japan Bloodstock

the winning Chromosome?

15 Thursday May 2025

Posted by Thoroughbred Research in G Haplotype, Japan Bloodstock, race horse breeding

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G, G Haplotype

Presumption was not long in changing to disappointment. My recipes for success were of no avail against the persistent successes of my rivals. The truth was that in spite of all I had seen and read I had not yet learned to reflect, – to reflect, that is, on the why and the wherefores. Senor Federico Tesio.

A recent discussion on forums has addressed the leading racing mares and the statistical observation that their immediate progeny may not replicate their comparable success.

To recognize this familiar problem are amongst complexes to the thoroughbred hybrid status.

A Table of representative Haplotype, to genetic variant versatility, tracing out in-built Types further deepens appreciation towards selection & Character.

Most fortunate has Japan’s model and racehorse development. They have scientifically positioned what the racing Thoroughbred requires to be athletic and more continues to knowledge & improvement.

In essence, home-base is the G haplotype where exists the chromosome. The first molecule sighting Chromosome 18 for racehorse genetics. Studies have explored how genetic markers on Equine Chromosome 18 (ECA18) relate to elite performance and optimal race distance, plus (apparently) the early prognosis to 2 year old fractures. Specifically, single nucleotide polymorphisms (SNPs) @ ECA18.

Chromosome 1 – Equine myopalladin refers to the MYPN gene, which encodes myopalladin, a protein involved in muscle structure and function. Myopalladin plays a crucial role in skeletal and cardiac muscle, helping regulate actin organization and maintaining muscle integrity.

In horses, genetic studies have identified MYPN as a potential target of selection in Thoroughbreds, particularly in relation to racing performance. Some research suggests that variations in this gene may influence muscle development.

G Haplotype ‘availability’ is the big clue.

A contemporary pedigree may still ‘figure’ to analyse such carrier strains: cross in/from or ‘link’ through numerous variable hybrid sources a ‘similar dominant potency to co-affinity in-origin Type’, which contributes homozygosity. 

There are two main ‘at-origin’ G sources, however Byerley Turk line and Godolphin Arabian were not then tested (2010) for C allele. The Quarter horse from a Janus mare by the Godolphin Arab/barb is the founder of C:C quarter horse.

Above all, ‘contributors’ & #G contribution appear most necessary. Should it not carry G within (‘upgrade’ stallion) then a product is possibly ‘lesser’, muscle twitch fibre. Possibly this is where Ken McLean gave to his impression of dominant zig-zag genes, thru any superior individual.

Steve Roman recently demonstrated average Beyer Speed Figure for Triple Crown race winners has declined over the past 40+ years. Some theories ‘why’ include overbreeding ‘same-line’ Y stallions, diminished genetic variation, and commercial breeding practices.

Australian Science has observed racehorse problem upon elite-thoroughbred L3a1b speculating deleterious alleles. https://madbarn.com/research/association-of-low-race-performance-with-mtdna-haplogroup-l3b-of-australian-thoroughbred-horses/

By general terms: a quick suggestive overview of Australasian pedigrees terms may suggest that the nature #G is going ‘into existential crisis’ through unwittingly its direction to over breeding, an over-refinement ecologically of the Thoroughbred.

Note: @1973 – Radicalisation of behaviour (stakes winners vs. ordinary horses) credit source The Typology of the Racehorse, Varola

In contrast German breeding excels to stamina and soundness, the Allegretta influence says enough. 

The G haplotype is the truer or deeper character of 1st type racing thoroughbred and well ‘established’ genetically before the GSB 1791 records. Pedigree breeding has gone through many ‘books’ (Versions) duly ‘wars’ that exiled and eliminated ‘other’ Lines, from ‘private’ Stud books, and as absorbed by the ‘official’ version international GSB. In many ways, GSB is the condensed version of ‘thoroughbred’.

The PCA and STRUCTURE results show that a number of individuals of the Quarter Horse and the Hanoverian breed are especially closely related to Thoroughbreds. https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0218407

Whilst matters remain unclarified, genetic availability is assured, further to rare variants & yet exposure to those has been limited.

by the very nature of natural inheritance, the practical necessity to carry over, present & re-vigorate the G Haplotype

@TBL

Effectively these carriers must represent by numerous variable availability; they ultimately MUST BE PRESENT as other strains are haplotypes (I), L1, L2, L3, **L4 etc. It is not a matter of alone, in-breeding or line-breeding. These carriers shall serve as dominant potency – co-affinity in-origin Type’, contribute the essential (ROH) run of Homozygosity. Equine homozygosity refers to a horse inheriting two identical copies of a particular gene from both parents. This can influence traits like coat color, muscle composition, and genetic health.

At a ‘cool’ 2025 Australian fee, $385k, the Coolmore stallion Wootton Bassett (GB) is the very fine example both by geno and phenotype (please note by reading our most recent posts, the #’G’ detail shall be evident to this remarkable sire). https://www.breednet.com.au/sire/premium/wootton-bassett

What a stallion – Wootton Bassett can do no wrong at the minute 💙@coolmorestud pic.twitter.com/PvEmhRdbhy

— Archie (@archieb100) May 10, 2025

**********************

***(update) its only come to my attention that the L4 is also of a K Haplotype. To my spectrum this makes more sense where the origin source goes to, in effect. It will be a Post at a later date.)

Ecclesiastes 1:9 “What has been will be again, what has been done will be done again; there is nothing new under the sun.” A cyclical nature of life where despite advancements and changes, fundamental patterns of existence remain the same.

Research Information

The genetic parameters of racing success and
longevity in the New Zealand Thoroughbred
racing industry (2025) https://www.tandfonline.com/doi/pdf/10.1080/00288233.2025.2492047

https://madbarn.com/research/association-of-low-race-performance-with-mtdna-haplogroup-l3b-of-australian-thoroughbred-horses/

Analyses of whole-genome sequences from 185 North American Thoroughbred horses, spanning 5 generations https://pubmed.ncbi.nlm.nih.gov/39358442/

S. Roman ⬇️

https://www.facebook.com/groups/1117522841687293/posts/9208726052566891/?comment_id=9238546202918209&notif_id=1746968495597805&notif_t=feedback_reaction_generic&ref=notif

https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0218407

Lyphard’s ‘greater’ inbreeding

08 Wednesday Jan 2025

Posted by Thoroughbred Research in Japan Bloodstock, race horse breeding, The Thoroughbred Link

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Byerley, Lyphard

‘Rising Trends in Inbreeding of Japanese Thoroughbred horses’. https://www.jstage.jst.go.jp/article/jes/35/4/35_2407/_pdf evaluates Northern Dancer through his son & sire Lyphard & Sunday Silence to paternal, Hail to Reason. The latest example to the winning 2yr G1 colt – Admire Zoom by Maurice from Daiwa Zoom by Heart’s Cry.

🇯🇵 The Asahi Hai Futurity Stakes #JRA
Kyoto – Groupe 1 – 2 ans – 1600m – 16 Pts – 840 177 €

🏆 🥇Admire Zoom (m) (Jpn) 🏇Yuga Kawada
🥈Museum Mile
🥉Lance Of Chaos
⏱️1'34"10 M: 2 1/2 – 2 1/2 – 2 – 3/4

📖(Maurice (Jpn) – Daiwa Zoom… pic.twitter.com/iQTp2AtWem

— French and International Horse Racing (@Vincenzo0612) December 15, 2024

It was and goes clear where Lyphard is key-marker, which pdf expresses “The probability that a gene in Lyphard is homozygous” from examples in Do Deuce is 1/27 (0.00781). Do Deuce (JPN) by Heart’s Cry has 4×4 Lyphard – 4×5 Hail to Reason

Lyphard, dam Goofed distaff >> 5×5 Chouberski + 5×5 Basse Terre @ Byerley Turk

As GSB fails upon many a numerous founder mare, where the Haplotype (at best) engages the truer familial family. Exploring these determinants, geneticists just might allow or may yet familiarize the public further, what more RH character matches to.

I’ve taken an account and strong interest to the Family 3-c of which ancestral source has Mentmore Lass & now, regrettably, Coterie in family 3-c is likely not to this category however, may yet interact in another similar Haplotype. Coterie in ancestral distaff as family 3-c arises in Northern Dancer’s distaff through Chance Shot (Fair Play), as also does Coterie ancestral distaff to Halo, sire of Sunday Silence.

Family 3C: Mentmore Lass is ancestral distaff to Radium by Bend Or ( & note Bend Or is actually Tadcaster). see reference to https://www.plusvital.com/wp-content/uploads/2017/03/Resolving-the-identity-of-the-founding-elite-thoroughbred-racehorses.pdf?fbclid=IwAR1aUIw5BCy3udD5QTm2g3MVcYKP2x6qBVzid4cUlbyf92gRiPCshI-Rv84***Figure 2. The fact that Bend Or/Tadcaster geno is in fact Clemence shall clarify the extent of the Martha Lynn lineage ie Carbine and descendants recognizing a Haplotype L4 inheritance. ***Bull Dog (FR) – Bend or/Tadcaster, Carbine, Lord Clifden is a great example to be observed.

The family 3-c with haplotype similarity in Family 37 tho rarely seen to the contemporary Ped-Tables Also it seems a similarity to some earlier lines in family 18, 18-a & American Family 48 + 1branch in Family 24. (ex- Table 2, https://www.plusvital.com/wp-content/uploads/2017/03/Thoroughbred-racehorse-mitochondrial-DNA-demonstrates-closer-than-expected-links-between-maternal-genetic-history.pdf

Of past, elite-superior type has Radium – sire of Night Raid, sire of Phar Lap. Radium son Clarissmus (GB) is broodmare sire of Tesio bred, Donatello (Blenheim). Influence to French bred Triple Crown 2yo Brantome (Blandford).

Come, upon Lyphard, thedam Goofed has Formor (FR) to b/m sire Clarissmus by Radium.

This familiar insight runs to Elite US sire Gun Runner has 5×4 Lyphard + 4×5 Blushing Groom + 4×4 Fappiano. His line bred goes fascinating for 4s x 7d Herbager & 9x9x9 Bois Roussell thence the Vatout male line to dam line Vasthi/Vaya. It further astonishes the signficant 8x #Byerley Turk in Ksar particularly & further leverages to high-notables like 11x ***Bull Dog.

Forever worth every cent, Gun Runner (US) at 2025 US$250,000 duly his siring factors classic bloodlines, potency undeniable & supreme genotype. https://www.americasbestracing.net/the-sport/2024-gun-runner-qualities-horse-needs-long-successful-racing-career

With casting over Gun Runner’s son and new sire Gunite, the influence to Radium in Naskra arises so it can be reasonably expected he shall be very exciting. Again a Radium influence (fam 3-c haplotype A1a) Sierre Leone via b/m sire Malibu Moon >> Green Dancer >> Val de Loir (FR)

SIERRA LEONE STRIKES GOLD IN THE @BREEDERSCUP CLASSIC! #BC24 pic.twitter.com/RRoFL3p6Io

— At The Races (@AtTheRaces) November 2, 2024

It is a certainty geneticists shall place more precision to the GSB.

Click to access HillAnimalGenetics.pdf

Clarissimus (Radium) won the Two Thousand Guineas and was second in the 1916 St Leger.

Clarissimus bred and owned by Lord Falmouth, was out of the unbeaten Quintessence, winner of the 1903 One Thousand Guineas. The name of Clarissimus was in hundreds of the most ‘fashionable’ French pedigrees.

Equinox (JPN) – Byerley Turk dosage

09 Tuesday May 2023

Posted by Thoroughbred Research in Byerly Turk, genotype breeding, Japan Bloodstock, Japan Racing, race horse breeding

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BT, GB, Ksar, Tourbillon

Brilliance? The Byerley Turk is the Axis.

Equinox (JPN) by Kitasan Black (Halo/Hail to Reason male line, from Chateau Blanche ex- King Halo (JPN) from the Lyphard male line. Pedigree.

Equinox demonstrates a fine pedigree. His grand sire, G2 sire Black Tide, a full brother to Deep Impact, Japan’s Triple Crown winner. Son Kitasan Black, a multiple G.1 distance winner honours as Japan’s 2016/17 Horse of the Year, sire of Equinox (Kitasan’s first G1 winner with a new track record of 2:25.65 @ the 2023 Dubai Sheema Classic. His time-rating 129 and no.1 Longines Worlds Best Racehorse ranking.

Superstar Equinox – a phenotype with exceptional ability. His elasticity upon every stride, a verve to admire. There are influential potent strains however capturing morphological condition is the key that notably, Japan’s breeding program excels to. They’re pure racehorse.

December 2022 genetic researchers found common protein variants influencing racing phenotype. With respect to researchers, the publication yields enduring curiosity. What individuals prove desired pheno?

What pedigree influences strike most?

💥Flames💥 to Equinox veins

As goes above, those of Byerley Turk male line, as Marcel Boussac bred were highly regarded as superb Types within the thoroughbred Type.

  • carrying 5×5 Chouberski has Lyphard (Northern Dancer) via, dam Goofed, big plus – she carries another Harkaway ‘strain’ outside of King Tom/St Simon
  • Equinox – 5x5x4 Lyphard.
  • Additional to Equinox with #BT influence are Ambriopase, Trevieres (FR) b/m sire Clarion, Hoist the Flag thru Tourbillon daughter line, 6th dam sire Gillies de Retz (Ksar)

 “He was muscular, athletic and well-balanced with strong hindquarters and had exceptional finishing speed.” credit – http://www.americanclassicpedigrees.com/lyphard.html

above credit: Lyphard on Facebook

Lyphard is well considered the stronger stamina line of Northern Dancer.

Whilst commentators of sports horse breeding take plentiful account for the versatile Byerley Turk blood, (Article here) its unfathomable the #BT racehorse tail male hangs by a delicate thread.

The big question …. will science disclose that Byerley Turk is the genetic necessity, the foundational sire necessary to continue?

Yes, they can show Byerley Turk #BT has a specific allele detected. The allelic variation of the tetranucleotide microsatelite marks the TB-oB1 clade. (nb. the Godolphin is Tb-oB3b).

The diagram clade 👉(P.36) PDF file demonstrates. (open Here) , where the impact of Byerley Turk – TB-oB1at the potential loss as its racing phenotype cannot be more clearly obvious.

Sabine Felkel’s work. P.6 here. ✅

⬇️⬇️⬇️

Validates pedigree through genetic markers, not just records.

Highlights how specific microsatellites can isolate overlooked lines like the Byerley Turk, offering tools for conservation genomics.

Provides a blueprint for expanding Y-chromosome research across lesser-represented bloodlines—vital to your goal of genetic diversity preservation.

TB-oB1 is a significant haplotype to the racing population as it was always down through ages, onwards the future gene pools!

Credit ref. – Full article here….(to premise that they were not able to get historical samples from horses from that sire line (#BT & #GB) the researchers discounted the possibility that the “C” allele may have come from either the Byerley Turk or the Godolphin Arabian (also known as the Godolphin Barb).

Let’s think about #BT genetic influence: ➡️🏆➡️🏆Australia and New Zealand 1988/89 Raceform Sires Key fact AHONOORA (GB) Ch 1975 Lorenzaccio-Helen Nichols-Martial. Stakes winners of 7 inc, York William Hill Sprint Championship (5f) G2. Sire in Europe of Don’t Forget Me, Park Express, Park Appeal, Project Manager, Ginny Binny, Indian Ridge, Nashamaa, Princess Athena, Ahononeyu, Balbillard, Princess Tracy etc. First season at stud in New Zealand – Fee $50,000 (sire of dual G1 winner Ball Park from a Biscay mare & Sire of G3 winner Stadium)

  • Further #BT…Cenchire Br 1982 Century-Chire King of Babylon (IRE) Won 8 races with brilliant speed. Took 1.1 seconds off Reliable Travel Handicap. Century champion sire and sire of sires
  • Don’t Forget Me (Ahonoora) Dual Group winner at two. Dual classic winner at three. English General Accident 2000 Guineas G1 (record time)

AHONOORA (Greville Starkey). By a poor Sire (Lorenzacccio) & from a family of little distinction, he became a high-class sprinter & influential Sire. His progeny included Park Appeal, Park Express, Don't Forget Me, Indian Ridge & Derby winner Dr Devious, before his death aged 14. pic.twitter.com/6F2d4hBFGd

— Chris (@cmoreton99) April 22, 2018

Brilliance? The Byerley Turk is the Axis.


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